PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g026160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 531aa    MW: 58311.1 Da    PI: 5.2475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g026160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11343385754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  A+eY+k+L
  Sopen06g026160.1 343 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIEYLKEL 385
                       79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16339403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-13343389No hitNo description
Gene3DG3DSA:4.10.280.105.8E-16343399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.01E-6448520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MLSRVNSMQV WDMEGKQEEE KEENFTNKEN TTNVELENKQ DMELGALSTF KSMIDGTDVD  60
WYHNNMQNHT ENICFTQNFT ELAENSMFLQ PVVPVDSSSS CSPSSVSVFN NLDPSQVHYF  120
LAQKAINNNP LDYSFNLGCE NGFLEAQGMG GLNKGGFLLA GGGFHDLSSQ NQMGNPNLNS  180
FTQYPSSHLP QNTTTTGFSP LGFVDGSANE NSLFLNRSKL LKPLDNFASN GAQPTLFQKR  240
AALRKNLANT TGGSLGDFGG EIGQNSMNGE NERKRKWGSG EELDDVSFDG CTLSYDSDDL  300
TENVTNKVDD SVKNGGNSSN ATSTVTGGNQ KGKKKGLPAK NLMAERRRRK KLNDRLYMLR  360
SVVPRISKMD RASILGDAIE YLKELLQKIN DLHNELESTP PSSSLTQTTS FYPLTPTGPA  420
LPGRIKEELY PSSFASPLSS PTGQPARVEV KARDGRAVNI HMFCSRRPGL LLSTMRALDN  480
LGLDIQQAVI SCFNGFALDI FRAEQCKEGQ DFHPDQIKAV LLDSAGCHGM I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332350KKKGLPAKNLMAERRRRKK
2344351ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6251390.0JX625139.1 Solanum lycopersicum inducer of CBF expression 1 (ICE1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079091.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-126ICE1_ARATH; Transcription factor ICE1
TrEMBLK4C8610.0K4C861_SOLLC; Inducer of CBF expression 1
STRINGSolyc06g068870.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-118bHLH family protein